Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs928837 | chr21:37381412 | T/G | 3.02E-5 | 488 | 16.65 | 13.2 | 12.82 | KM Plot |
| THCA | rs9296422 | chr6:43905816 | G/C | 1.01E-5 | 483 | 16.37 | 14.93 | 12.23 | KM Plot |
| THCA | rs9296479 | chr6:46132243 | A/C | 5.34E-5 | 489 | 15.77 | 16.37 | 27.37 | KM Plot |
| THCA | rs9298448 | chr8:52399632 | A/C | 0.000141 | 476 | 15.83 | 15.48 | 15.33 | KM Plot |
| THCA | rs9298451 | chr8:52433008 | C/T | 1.52E-6 | 487 | 14.93 | 18.03 | 18.13 | KM Plot |
| THCA | rs9302389 | chr16:20846111 | A/G | 9.15E-5 | 490 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs930412 | chr3:139262325 | A/G | 3.61E-5 | 486 | 15.9 | 17.1 | 13.08 | KM Plot |
| THCA | rs931253 | chr3:53298604 | A/C | 0.000241 | 477 | 16.48 | 15 | 17.17 | KM Plot |
| THCA | rs9322957 | chr14:36083323 | T/C | 5.58E-6 | 484 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs9324372 | chr1:91862744 | G/T | 7.75E-6 | 490 | 15.67 | 16.68 | 17.77 | KM Plot |
| THCA | rs9326087 | chr1:41504195 | G/T | 3.73E-12 | 489 | 17.7 | 17.73 | 14.92 | KM Plot |
| THCA | rs9350782 | chr6:79494468 | A/G | 1.46E-6 | 489 | 18.8 | 17.7 | 15.65 | KM Plot |
| THCA | rs9352649 | chr6:79489783 | T/G | 5.05E-6 | 488 | 18.8 | 16.17 | 15.77 | KM Plot |
| THCA | rs9352653 | chr6:79496863 | A/G | 2.76E-6 | 488 | 18.8 | 15.97 | 15.9 | KM Plot |
| THCA | rs9361440 | chr6:79489676 | C/A | 1.48E-6 | 488 | 18.8 | 17.7 | 15.63 | KM Plot |